Glyma18g53680 - SoyBase

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Report for Sequence Feature Glyma18g53680

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61944033
stop:	61949565
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20370	AT	Annotation by Michelle Graham. TAIR10: PEBP (phosphatidylethanolamine-binding protein) family protein \| chr4:11001011-11002965 REVERSE LENGTH=175	SoyBase	E_val: 5.00E-81	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0008429	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylethanolamine binding	SoyBase	N/A	ISS
KOG3346	KOG	Phosphatidylethanolamine binding protein	JGI		ISS
PTHR11362	Panther	PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN	JGI		ISS
PF01161	PFAM	Phosphatidylethanolamine-binding protein	JGI		ISS
UniRef100_E3WC95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Flowering locus T n=1 Tax=Glycine max RepID=E3WC95_SOYBN	SoyBase	E_val: 4.00E-126	ISS
UniRef100_E3WC95	UniRef	Annotation by Michelle Graham. Best UniRef hit: Flowering locus T n=1 Tax=Glycine max RepID=E3WC95_SOYBN	SoyBase	E_val: 4.00E-126	ISS

Proteins Associated with Glyma18g53680

Locus	Gene Symbol	Protein Name
	FT1a	Flowering locus T gene 1a
	FT1a	Flowering Locus T 1 gene a

Expression Patterns of Glyma18g53680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53680

Paralog	Evidence	Comments
Glyma08g47810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g298900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g53680

Limit To All Plant Sequences

>Glyma18g53680.2   sequence type=transcript   gene model=Glyma18g53680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCAACTTATCGATATTAATTTATTATGCCTAGATCAACGGACCCTCTTGTTATTGGAGGTGTAATAGGAGATGTTTTGGAGCCTTTCACAAGTAGCGTTTCTATGGGGATAGTCTATAATAATTGCCCTCAAGTTATCAACTGCTGTGAGCTCAAACCCTCCAAAATCCTCAATCGACCAAGAATTGAAATTGGTGGAGATGACCTCAGGACCTTTTACACCCTGGTTATGGTGGATCCTGATGCACCTAGCCCAGGCAATCCAACCCAGAGAGAATATTTGCACTGGTTGATAACCAATATTCCTGCAACTACAGGGGCAAACTTCGGCTGGCGCCAGAATTTCAACACTAGAGACTTTGCTGAGATTTATAATCTTGGATTACCAGTAGCGGCCATGTACTTCAACTGTAAACGAGAAAATGATCAAAGCAGTGGAAGAAGAAGATAATAGAAAGAAAACTATTATTAATATATATCCCGAGTTTTTATCAGCTCAACATGAAATAATAAATAACTTCTTTTTATATTTAAGTATTTATTAAATATAAATATATATTATATAAAAAAATCAACACGAATTTCAATTAAAAAATAATATTAGTATGAAAGAGCTAATGGCCCCTAAAGAAAAAGGTGCCTAGGGCATCAGCAATAAGCTTAGTATGAAGGTCATTTGGACATACCTGCCAAACTGAAGATCTTCAGACGAGCCATTAATTTCCCAGCAAGGTAATCTGCAATCTGATTAGCTTCTCTGAATGTGTGTTGGAACACCAGATTCCACTCAAGCTGCATGAAGGTTCTGATCTTGGTAATCAAAGGAGACACATTCACAAATAATTATGTACGTATGAGGAAATAATCGATTAATCTACTTGTTCTTCAAACTCATATTTATGAAGAGCAAAGTAATTGATTAATTCTGTTGATTTTATAAATAACATCTTTGTTTTTTCA

>Glyma18g53680.3   sequence type=transcript   gene model=Glyma18g53680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCAACTTATCGATATTAATTTATTATGCCTAGATCAACGGACCCTCTTGTTATTGGAGGTGTAATAGGAGATGTTTTGGAGCCTTTCACAAGTAGCGTTTCTATGGGGATAGTCTATAATAATTGCCCTCAAGTTATCAACTGCTGTGAGCTCAAACCCTCCAAAATCCTCAATCGACCAAGAATTGAAATTGGTGGAGATGACCTCAGGACCTTTTACACCCTGGTTATGGTGGATCCTGATGCACCTAGCCCAGGCAATCCAACCCAGAGAGAATATTTGCACTGGTTGATAACCAATATTCCTGCAACTACAGGGGCAAACTTCGGTATGTGCACAATTCTTATTTTCTATATATCTTCCTTGTACACCTTTTATATTTAATTGGCAGTAAATTATAAAGCCTTCGTGTTATTATGTCTGATCAAAGTAAATCTCAAATTTCTTTAAATTGATATTACTTTCAATCAGTTATAAAACATCTTATTAATT

Coding sequences of Glyma18g53680

Limit To All Plant Sequences

>Glyma18g53680.1   sequence type=CDS   gene model=Glyma18g53680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTAGATCAACGGACCCTCTTGTTATTGGAGGTGTAATAGGAGATGTTTTGGAGCCTTTCACAAGTAGCGTTTCTATGGGGATAGTCTATAATAATTGCCCTCAAGTTATCAACTGCTGTGAGCTCAAACCCTCCAAAATCCTCAATCGACCAAGAATTGAAATTGGTGGAGATGACCTCAGGACCTTTTACACCCTGGTTATGGTGGATCCTGATGCACCTAGCCCAGGCAATCCAACCCAGAGAGAATATTTGCACTGGTTGATAACCAATATTCCTGCAACTACAGGGGCAAACTTCGGAGAAGAGATTGTCTCCTATGAAAGTCCACGTCCAATAGTAGGGATTCATCGAATAGTTTTTGTGTTATTTCGTCAGCTGCGTAGACTAACTCTGCAACCTCCAGGCTGGCGCCAGAATTTCAACACTAGAGACTTTGCTGAGATTTATAATCTTGGATTACCAGTAGCGGCCATGTACTTCAACTGTAAACGAGAAAATGATCAAAGCAGTGGAAGAAGAAGATAA

>Glyma18g53680.2   sequence type=CDS   gene model=Glyma18g53680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTAGATCAACGGACCCTCTTGTTATTGGAGGTGTAATAGGAGATGTTTTGGAGCCTTTCACAAGTAGCGTTTCTATGGGGATAGTCTATAATAATTGCCCTCAAGTTATCAACTGCTGTGAGCTCAAACCCTCCAAAATCCTCAATCGACCAAGAATTGAAATTGGTGGAGATGACCTCAGGACCTTTTACACCCTGGTTATGGTGGATCCTGATGCACCTAGCCCAGGCAATCCAACCCAGAGAGAATATTTGCACTGGTTGATAACCAATATTCCTGCAACTACAGGGGCAAACTTCGGCTGGCGCCAGAATTTCAACACTAGAGACTTTGCTGAGATTTATAATCTTGGATTACCAGTAGCGGCCATGTACTTCAACTGTAAACGAGAAAATGATCAAAGCAGTGGAAGAAGAAGATAA

>Glyma18g53680.3   sequence type=CDS   gene model=Glyma18g53680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTAGATCAACGGACCCTCTTGTTATTGGAGGTGTAATAGGAGATGTTTTGGAGCCTTTCACAAGTAGCGTTTCTATGGGGATAGTCTATAATAATTGCCCTCAAGTTATCAACTGCTGTGAGCTCAAACCCTCCAAAATCCTCAATCGACCAAGAATTGAAATTGGTGGAGATGACCTCAGGACCTTTTACACCCTGGTTATGGTGGATCCTGATGCACCTAGCCCAGGCAATCCAACCCAGAGAGAATATTTGCACTGGTTGATAACCAATATTCCTGCAACTACAGGGGCAAACTTCGGTATGTGCACAATTCTTATTTTCTATATATCTTCCTTGTACACCTTTTATATTTAA

Predicted protein sequences of Glyma18g53680

Limit To All Plant Sequences

>Glyma18g53680.1   sequence type=predicted peptide   gene model=Glyma18g53680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRSTDPLVIGGVIGDVLEPFTSSVSMGIVYNNCPQVINCCELKPSKILNRPRIEIGGDDLRTFYTLVMVDPDAPSPGNPTQREYLHWLITNIPATTGANFGEEIVSYESPRPIVGIHRIVFVLFRQLRRLTLQPPGWRQNFNTRDFAEIYNLGLPVAAMYFNCKRENDQSSGRRR*

>Glyma18g53680.2   sequence type=predicted peptide   gene model=Glyma18g53680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRSTDPLVIGGVIGDVLEPFTSSVSMGIVYNNCPQVINCCELKPSKILNRPRIEIGGDDLRTFYTLVMVDPDAPSPGNPTQREYLHWLITNIPATTGANFGWRQNFNTRDFAEIYNLGLPVAAMYFNCKRENDQSSGRRR*

>Glyma18g53680.3   sequence type=predicted peptide   gene model=Glyma18g53680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRSTDPLVIGGVIGDVLEPFTSSVSMGIVYNNCPQVINCCELKPSKILNRPRIEIGGDDLRTFYTLVMVDPDAPSPGNPTQREYLHWLITNIPATTGANFGMCTILIFYISSLYTFYI*

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